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Updates for better integration with Akvo

master
Trevor Irons 6 years ago
parent
c9d9d03383
commit
0d25529377
8 changed files with 45 additions and 32 deletions
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  1. 1
    1
      CMakeLists.txt
  2. 2
    0
      examples/CMakeLists.txt
  3. 0
    1
      examples/KernelAligner.cpp
  4. 1
    0
      examples/KernelV0-2.cpp
  5. 29
    22
      examples/KernelV0.cpp
  6. 2
    2
      include/KernelV0.h
  7. 2
    2
      include/LoopInteractions.h
  8. 8
    4
      src/KernelV0.cpp

+ 1
- 1
CMakeLists.txt View File 

@@ -1,7 +1,7 @@
1 1 
 # Configure Merlin
2 2 
 set(MERLIN_VERSION_MAJOR "0")
3 3 
 set(MERLIN_VERSION_MINOR "0")
4 
-set(MERLIN_VERSION_PATCH "2")
4 
+set(MERLIN_VERSION_PATCH "3")
5 5 
 set(MERLIN_VERSION "\"${MERLIN_VERSION_MAJOR}.${MERLIN_VERSION_MINOR}.${MERLIN_VERSION_PATCH}\"")
6 6 
 set(MERLIN_VERSION_NOQUOTES "${MERLIN_VERSION_MAJOR}.${MERLIN_VERSION_MINOR}.${MERLIN_VERSION_PATCH}")
7 7

+ 2
- 0
examples/CMakeLists.txt View File 

@@ -32,6 +32,8 @@ endif()
32 32
33 33 
 INSTALL_TARGETS( "/share/Merlin/"
34 34 
 	KernelV0
35 
+	KernelV0-2
36 
+	KernelAligner
35 37 
 	Coupling
36 38 
 	Interference
37 39 
 )

+ 0
- 1
examples/KernelAligner.cpp View File 

@@ -28,6 +28,5 @@ int main(int argc, char** argv) {
28 28 
         exit(EXIT_SUCCESS);
29 29 
     }
30 30 
     auto K0 = KernelV0::NewSP();
31 
-
32 31 
     std::cout << *K0 << std::endl;
33 32 
 }

+ 1
- 0
examples/KernelV0-2.cpp View File 

@@ -30,6 +30,7 @@ int main(int argc, char** argv) {
30 30
31 31 
     std::cout << "Using kernel paramaters: " << argv[1] << std::endl;
32 32 
     auto Kern = KernelV0::DeSerialize( YAML::LoadFile(argv[1]) );
33 
+    std::cout << "Kernel DeSerialized successful" << std::endl;
33 34
34 35 
     std::vector<std::string> tx = {std::string(argv[2])};
35 36 
     std::vector<std::string> rx = {std::string(argv[3])};

+ 29
- 22
examples/KernelV0.cpp View File 

@@ -24,7 +24,10 @@ std::shared_ptr<PolygonalWireAntenna> CircularLoop ( int nd, Real radius, Real O
24 24
25 25 
 int main(int argc, char** argv) {
26 26
27 
-    Real offset = atof(argv[1]);
27 
+    if (argc < 6) {             // 1          2           3                    4                5
28 
+        std::cout << "./KernelV0 TxCoil.yaml RxCoil.yaml  EMEarthModel.yaml    AkvoDataSet.yaml Output.yaml \n";
29 
+        exit(EXIT_SUCCESS);
30 
+    }
28 31
29 32 
 	auto earth = LayeredEarthEM::NewSP();
30 33 
 		earth->SetNumberOfLayers(3);
 
@@ -34,10 +37,19 @@ int main(int argc, char** argv) {
34 37 
         // From NOAA, Laramie WY, June 9 2016, aligned with mag. north
35 38 
         earth->SetMagneticFieldIncDecMag( 67, 9, 52750, NANOTESLA );
36 39
37 
-    // Transmitter loops
38 
-    auto Tx1 = CircularLoop(21, 15, 100, 100);
39 
-    auto Tx2 = CircularLoop(21, 15, 100, 100 + offset); // 100, 115, 124.8, 130
40 
-    //auto Tx1 = CircularLoop(60, 15, 0, 0); // was 60
40 
+        auto Tx1 = PolygonalWireAntenna::DeSerialize( YAML::LoadFile(argv[1]) );
41 
+        auto Tx2 = PolygonalWireAntenna::DeSerialize( YAML::LoadFile(argv[2]) );
42 
+
43 
+        //////////////////////////////////////               _
44 
+        Tx1->SetCurrent(1.);                //               |
45 
+        Tx1->SetNumberOfTurns(1);           //    Set these from Akvo input!
46 
+        Tx1->SetNumberOfFrequencies(1);     //               |
47 
+        Tx1->SetFrequency(0,2246);          //               |
48 
+        Tx2->SetCurrent(1.);                //               |
49 
+        Tx2->SetNumberOfTurns(1);           //           \   |   /
50 
+        Tx2->SetNumberOfFrequencies(1);     //            \  |  /
51 
+        Tx2->SetFrequency(0,2246);          //             \ | /
52 
+        //////////////////////////////////////               _
41 53
42 54 
     auto Kern = KernelV0::NewSP();
43 55 
         Kern->PushCoil( "Coil 1", Tx1 );
 
@@ -46,24 +58,15 @@ int main(int argc, char** argv) {
46 58
47 59 
         Kern->SetIntegrationSize( (Vector3r() << 200,200,200).finished() );
48 60 
         Kern->SetIntegrationOrigin( (Vector3r() << 0,0,0).finished() );
49 
-        Kern->SetTolerance( 1e-12 ); // 1e-12
61 
+        Kern->SetTolerance( 1e-9 ); // 1e-12
50 62
51 
-        Kern->AlignWithAkvoDataset( YAML::LoadFile(argv[2]) );
63 
+        auto AkvoDataNode = YAML::LoadFile(argv[4]);
64 
+        Kern->AlignWithAkvoDataset( AkvoDataNode );
52 65
53 
-        Kern->SetPulseDuration(0.020);
54 
-        VectorXr I(36);
66 
+        // These should to into AlignWithAkvoDataSet...
67 
+        Kern->SetPulseDuration( AkvoDataNode["pulseLength"][0].as<Real>() );
68 
+        Kern->SetPulseCurrent( AkvoDataNode["Pulses"]["Pulse 1"]["current"].as<VectorXr>() ); // nbins, low, high
55 69
56 
-        // off from VC by 1.075926340216996
57 
-        // Pulses from Wyoming Red Buttes exp 0
58 
-        I << 397.4208916184016, 352.364477036168, 313.0112765842783, 278.37896394065376, 247.81424224324982,
59 
-             220.77925043190442, 196.76493264105017, 175.31662279234038, 156.0044839325404, 138.73983004230124,
60 
-             123.42064612625474, 109.82713394836259, 97.76534468972267, 87.06061858367781, 77.56000002944572, 69.1280780096311,
61 
-             61.64250263640252, 54.99473044877554, 49.091182970515476, 43.84634004556388, 39.184136917167976, 35.03619319797924,
62 
-             31.347205894128976, 28.06346770557137, 25.139117042424758, 22.53420773366429, 20.214205433283347,
63 
-             18.144318026099942, 16.299965972298878, 14.652633628829891, 13.184271405688083, 11.870540177313893,
64 
-             10.697057141915716, 9.64778948429609, 8.709338689612677, 7.871268012862094;
65 
-        //Kern->SetPulseCurrent( VectorXr::LinSpaced( 1, 10, 200 )  ); // nbins, low, high
66 
-        Kern->SetPulseCurrent( I ); // nbins, low, high
67 70
68 71 
         //VectorXr interfaces = VectorXr::LinSpaced( 41, .5, 45.5 ); // nlay, low, high
69 72 
         VectorXr interfaces = VectorXr::LinSpaced( 51, .5, 45.5 ); // nlay, low, high
 
@@ -76,10 +79,12 @@ int main(int argc, char** argv) {
76 79
77 80 
     // We could, I suppose, take the earth model in here? For non-linear that
78 81 
     // may be more natural to work with?
79 
-    std::vector<std::string> tx = {std::string("Coil 1"), std::string("Coil 2") };
82 
+    //std::vector<std::string> tx = {std::string("Coil 1"), std::string("Coil 2") };
83 
+    std::vector<std::string> tx = {std::string("Coil 1")};  //, std::string("Coil 2") };
80 84 
     std::vector<std::string> rx = {std::string("Coil 2")};
81 85 
     Kern->CalculateK0( tx, rx, false );
82 86
87 
+/*
83 88 
     std::ofstream dout = std::ofstream(std::string("k-Tx2coil-Rx1coil-offset-")+ std::string(argv[1])+ std::string(".dat"));
84 89 
     //std::ofstream dout = std::ofstream(std::string("k-coincident.dat"));
85 90 
         dout << interfaces.transpose() << std::endl;
 
@@ -89,8 +94,10 @@ int main(int argc, char** argv) {
89 94 
         dout << "#imag\n";
90 95 
         dout << Kern->GetKernel().imag() << std::endl;
91 96 
         dout.close();
97 
+*/
92 98
93 
-    std::ofstream out = std::ofstream(std::string("k-Tx2coil-Rx1coil-offset-")+std::string(argv[1])+std::string(".yaml"));
99 
+    //std::ofstream out = std::ofstream(std::string("k-Tx2coil-Rx1coil-offset-")+std::string(argv[1])+std::string(".yaml"));
100 
+    std::ofstream out = std::ofstream(std::string(argv[5]));
94 101 
     //std::ofstream out = std::ofstream(std::string("k-coincident.yaml"));
95 102 
     out << *Kern;
96 103 
     out.close();

+ 2
- 2
include/KernelV0.h View File 

@@ -20,7 +20,7 @@
20 20 
 #define  KERNELV0_INC
21 21
22 22 
 #pragma once
23 
-#include "LemmaObject.h"
23 
+#include "MerlinObject.h"
24 24 
 #include "LayeredEarthEM.h"
25 25 
 #include "PolygonalWireAntenna.h"
26 26 
 #include "EMEarth1D.h"
 
@@ -58,7 +58,7 @@ namespace Lemma {
58 58 
      * \details This class calculates the imaging kernel for a free induction decay
59 59 
      *          pulse. The methodology follows from Weichman et al., 2000.
60 60 
      */
61 
-    class KernelV0 : public LemmaObject {
61 
+    class KernelV0 : public MerlinObject {
62 62
63 63 
         friend std::ostream &operator<<(std::ostream &stream, const KernelV0 &ob);
64 64

+ 2
- 2
include/LoopInteractions.h View File 

@@ -41,8 +41,8 @@ namespace Lemma {
41 41
42 42 
     /**
43 43 
      * \ingroup Merlin
44 
-     * \brief
45 
-     * \details
44 
+     * \brief   Class for calculating the interactions between wire loops.
45 
+     * \details The calculations are done in the frequency domain.
46 46 
      */
47 47 
     template< INTERACTION Type  >
48 48 
     class LoopInteractions : public LemmaObject {

+ 8
- 4
src/KernelV0.cpp View File 

@@ -17,7 +17,7 @@
17 17 
  * @copyright Copyright (c) 2008, Colorado School of Mines
18 18 
  */
19 19
20 
-
20 
+#include "MerlinConfig.h"
21 21 
 #include "KernelV0.h"
22 22 
 #include "FieldPoints.h"
23 23 
 
@@ -37,7 +37,7 @@ namespace Lemma {
37 37 
     //      Method:  KernelV0
38 38 
     // Description:  constructor (locked)
39 39 
     //--------------------------------------------------------------------------------------
40 
-    KernelV0::KernelV0 (const ctor_key& key) : LemmaObject( key ) {
40 
+    KernelV0::KernelV0 (const ctor_key& key) : MerlinObject( key ) {
41 41
42 42 
     }  // -----  end of method KernelV0::KernelV0  (constructor)  -----
43 43 
 
@@ -46,7 +46,8 @@ namespace Lemma {
46 46 
     //      Method:  KernelV0
47 47 
     // Description:  DeSerializing constructor (locked)
48 48 
     //--------------------------------------------------------------------------------------
49 
-    KernelV0::KernelV0 (const YAML::Node& node, const ctor_key& key) : LemmaObject(node, key) {
49 
+    KernelV0::KernelV0 (const YAML::Node& node, const ctor_key& key) : MerlinObject(node, key) {
50 
+
50 51 
         //node["PulseType"] = "FID";
51 52 
         Larmor = node["Larmor"].as<Real>();
52 53 
         Temperature = node["Temperature"].as<Real>();
 
@@ -116,7 +117,8 @@ namespace Lemma {
116 117 
     //      Method:  Serialize
117 118 
     //--------------------------------------------------------------------------------------
118 119 
     YAML::Node  KernelV0::Serialize (  ) const {
119 
-        YAML::Node node = LemmaObject::Serialize();
120 
+
121 
+        YAML::Node node = MerlinObject::Serialize();
120 122 
         node.SetTag( GetName() );
121 123
122 124 
         // Coils Transmitters & Receivers
 
@@ -173,11 +175,13 @@ namespace Lemma {
173 175 
             std::cout << node["processed"] << std::endl;
174 176 
         }
175 177 
         if (node["pulseType"].as<std::string>() == "FID") {
178 
+            std::cout << "FID pulse detected" << std::endl;
176 179 
             PulseI  = node["Pulses"]["Pulse 1"]["current"].as<VectorXr>();
177 180 
             this->SetPulseDuration( node["pulseLength"][0].as<double>() );
178 181 
         } else {
179 182 
             std::cerr << "Pulse Type " << node["PulseType"] << "is not supported\n";
180 183 
         }
184 
+        std::cout << "Finished with Akvo file read" << std::endl;
181 185 
     }
182 186
183 187 
     //--------------------------------------------------------------------------------------

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