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journal work

master
Trevor Irons 6 years ago
parent
6ac0a32661
commit
2206e61b10
5 changed files with 53 additions and 31 deletions
Unified View Show Diff Stats
  1. 12
    12
      GUI/borehole2.py
  2. 10
    10
      GUI/borehole2.ui
  3. 25
    3
      GUI/main.py
  4. 4
    4
      MRProc.py
  5. 2
    2
      decay.py

+ 12
- 12
GUI/borehole2.py View File

2
2
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 # Form implementation generated from reading ui file 'borehole2.ui'
 3 
 # Form implementation generated from reading ui file 'borehole2.ui'
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 #
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 #
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-# Created: Mon Oct 30 10:31:57 2017
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-#      by: pyside-uic 0.2.15 running on PySide 1.2.2
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+# Created: Thu Apr  5 08:36:00 2018
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+#      by: pyside-uic 0.2.15 running on PySide 1.2.4
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 #
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 #
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 # WARNING! All changes made in this file will be lost!
 8 
 # WARNING! All changes made in this file will be lost!
9
9
43 
         self.scrollArea.setWidgetResizable(True)
 43 
         self.scrollArea.setWidgetResizable(True)
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         self.scrollArea.setObjectName("scrollArea")
 44 
         self.scrollArea.setObjectName("scrollArea")
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         self.scrollAreaWidgetContents = QtGui.QWidget()
 45 
         self.scrollAreaWidgetContents = QtGui.QWidget()
46 
-        self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 964, 800))
46 
+        self.scrollAreaWidgetContents.setGeometry(QtCore.QRect(0, 0, 970, 800))
47 
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
 47 
         sizePolicy = QtGui.QSizePolicy(QtGui.QSizePolicy.Maximum, QtGui.QSizePolicy.Maximum)
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         sizePolicy.setHorizontalStretch(0)
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         sizePolicy.setHorizontalStretch(0)
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         sizePolicy.setVerticalStretch(0)
 49 
         sizePolicy.setVerticalStretch(0)
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         self.gpdSpinBox.setGeometry(QtCore.QRect(220, 30, 71, 22))
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         self.gpdSpinBox.setGeometry(QtCore.QRect(220, 30, 71, 22))
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         self.gpdSpinBox.setMinimum(5)
 405 
         self.gpdSpinBox.setMinimum(5)
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         self.gpdSpinBox.setMaximum(30)
 406 
         self.gpdSpinBox.setMaximum(30)
407 
-        self.gpdSpinBox.setProperty("value", 14)
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+        self.gpdSpinBox.setProperty("value", 20)
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         self.gpdSpinBox.setObjectName("gpdSpinBox")
 408 
         self.gpdSpinBox.setObjectName("gpdSpinBox")
409 
         self.label_41 = QtGui.QLabel(self.gateGroupBox)
 409 
         self.label_41 = QtGui.QLabel(self.gateGroupBox)
410 
         self.label_41.setGeometry(QtCore.QRect(20, 35, 111, 16))
 410 
         self.label_41.setGeometry(QtCore.QRect(20, 35, 111, 16))
508 
         self.maskNSpinBox_4 = QtGui.QSpinBox(self.multiGroupBox)
 508 
         self.maskNSpinBox_4 = QtGui.QSpinBox(self.multiGroupBox)
509 
         self.maskNSpinBox_4.setGeometry(QtCore.QRect(70, 30, 81, 25))
 509 
         self.maskNSpinBox_4.setGeometry(QtCore.QRect(70, 30, 81, 25))
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         self.maskNSpinBox_4.setMaximum(100)
 510 
         self.maskNSpinBox_4.setMaximum(100)
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-        self.maskNSpinBox_4.setProperty("value", 2)
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+        self.maskNSpinBox_4.setProperty("value", 1)
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         self.maskNSpinBox_4.setObjectName("maskNSpinBox_4")
 512 
         self.maskNSpinBox_4.setObjectName("maskNSpinBox_4")
513 
         self.nT2SpinBox = QtGui.QSpinBox(self.multiGroupBox)
 513 
         self.nT2SpinBox = QtGui.QSpinBox(self.multiGroupBox)
514 
         self.nT2SpinBox.setGeometry(QtCore.QRect(70, 60, 81, 25))
 514 
         self.nT2SpinBox.setGeometry(QtCore.QRect(70, 60, 81, 25))
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         self.nT2SpinBox.setMinimum(10)
 515 
         self.nT2SpinBox.setMinimum(10)
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         self.nT2SpinBox.setMaximum(100)
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         self.nT2SpinBox.setMaximum(100)
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-        self.nT2SpinBox.setProperty("value", 20)
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+        self.nT2SpinBox.setProperty("value", 30)
518 
         self.nT2SpinBox.setObjectName("nT2SpinBox")
 518 
         self.nT2SpinBox.setObjectName("nT2SpinBox")
519 
         self.label_30 = QtGui.QLabel(self.multiGroupBox)
 519 
         self.label_30 = QtGui.QLabel(self.multiGroupBox)
520 
         self.label_30.setGeometry(QtCore.QRect(2, 63, 61, 20))
 520 
         self.label_30.setGeometry(QtCore.QRect(2, 63, 61, 20))
531 
         self.hiT2SpinBox.setDecimals(1)
 531 
         self.hiT2SpinBox.setDecimals(1)
532 
         self.hiT2SpinBox.setMinimum(20.0)
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         self.hiT2SpinBox.setMinimum(20.0)
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         self.hiT2SpinBox.setMaximum(8000.0)
 533 
         self.hiT2SpinBox.setMaximum(8000.0)
534 
-        self.hiT2SpinBox.setProperty("value", 500.0)
534 
+        self.hiT2SpinBox.setProperty("value", 1000.0)
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         self.hiT2SpinBox.setObjectName("hiT2SpinBox")
 535 
         self.hiT2SpinBox.setObjectName("hiT2SpinBox")
536 
         self.label = QtGui.QLabel(self.multiGroupBox)
 536 
         self.label = QtGui.QLabel(self.multiGroupBox)
537 
         self.label.setGeometry(QtCore.QRect(160, 30, 91, 20))
 537 
         self.label.setGeometry(QtCore.QRect(160, 30, 91, 20))
1057 
         self.horizontalLayout.addWidget(self.scrollArea)
 1057 
         self.horizontalLayout.addWidget(self.scrollArea)
1058 
         MainWindow.setCentralWidget(self.centralwidget)
 1058 
         MainWindow.setCentralWidget(self.centralwidget)
1059 
         self.menubar = QtGui.QMenuBar(MainWindow)
 1059 
         self.menubar = QtGui.QMenuBar(MainWindow)
1060 
-        self.menubar.setGeometry(QtCore.QRect(0, 0, 1000, 25))
1060 
+        self.menubar.setGeometry(QtCore.QRect(0, 0, 1000, 22))
1061 
         self.menubar.setObjectName("menubar")
 1061 
         self.menubar.setObjectName("menubar")
1062 
         self.menuFile = QtGui.QMenu(self.menubar)
 1062 
         self.menuFile = QtGui.QMenu(self.menubar)
1063 
         self.menuFile.setObjectName("menuFile")
 1063 
         self.menuFile.setObjectName("menuFile")
1138 
         self.headerFileTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
 1138 
         self.headerFileTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
1139 
 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
 1139 
 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
1140 
 "p, li { white-space: pre-wrap; }\n"
 1140 
 "p, li { white-space: pre-wrap; }\n"
1141 
-"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:8pt; font-weight:400; font-style:italic;\">\n"
1141 
+"</style></head><body style=\" font-family:\'Sans\'; font-size:8pt; font-weight:400; font-style:italic;\">\n"
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 "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><span style=\" font-family:\'DejaVu Serif\'; font-size:9pt;\">Load supported RAW Dataset header from file menu</span></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
 1142 
 "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><span style=\" font-family:\'DejaVu Serif\'; font-size:9pt;\">Load supported RAW Dataset header from file menu</span></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
1143 
         self.label_4.setText(QtGui.QApplication.translate("MainWindow", "Pulse Type", None, QtGui.QApplication.UnicodeUTF8))
 1143 
         self.label_4.setText(QtGui.QApplication.translate("MainWindow", "Pulse Type", None, QtGui.QApplication.UnicodeUTF8))
1144 
         self.pulseTypeTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
 1144 
         self.pulseTypeTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
1145 
 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
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 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
1146 
 "p, li { white-space: pre-wrap; }\n"
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 "p, li { white-space: pre-wrap; }\n"
1147 
-"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:italic;\">\n"
1147 
+"</style></head><body style=\" font-family:\'Sans\'; font-size:11pt; font-weight:400; font-style:italic;\">\n"
1148 
 "<p style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:\'DejaVu Serif\'; font-size:10pt;\"><br /></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
 1148 
 "<p style=\"-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:\'DejaVu Serif\'; font-size:10pt;\"><br /></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
1149 
         self.label_6.setText(QtGui.QApplication.translate("MainWindow", "ν Tx  [Hz]", None, QtGui.QApplication.UnicodeUTF8))
 1149 
         self.label_6.setText(QtGui.QApplication.translate("MainWindow", "ν Tx  [Hz]", None, QtGui.QApplication.UnicodeUTF8))
1150 
         self.label_7.setText(QtGui.QApplication.translate("MainWindow", "τ Pulse 1 [ms]", None, QtGui.QApplication.UnicodeUTF8))
 1150 
         self.label_7.setText(QtGui.QApplication.translate("MainWindow", "τ Pulse 1 [ms]", None, QtGui.QApplication.UnicodeUTF8))
1170 
         self.stackEfficiency.setToolTip(QtGui.QApplication.translate("MainWindow", "<html><head/><body><p>If noise is entirely uncorrelated than noise should reduce in gate integration like sqrt --&gt; ( \\sum x_i^2    )^(1/2).</p><p><br/></p><p>This variable controls the root, with 2 as the theoretical, and 1 being no noise reduction with stacking.  </p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
 1170 
         self.stackEfficiency.setToolTip(QtGui.QApplication.translate("MainWindow", "<html><head/><body><p>If noise is entirely uncorrelated than noise should reduce in gate integration like sqrt --&gt; ( \\sum x_i^2    )^(1/2).</p><p><br/></p><p>This variable controls the root, with 2 as the theoretical, and 1 being no noise reduction with stacking.  </p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
1171 
         self.label_62.setText(QtGui.QApplication.translate("MainWindow", "Stack efficiency", None, QtGui.QApplication.UnicodeUTF8))
 1171 
         self.label_62.setText(QtGui.QApplication.translate("MainWindow", "Stack efficiency", None, QtGui.QApplication.UnicodeUTF8))
1172 
         self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), QtGui.QApplication.translate("MainWindow", "Preprocess RAW", None, QtGui.QApplication.UnicodeUTF8))
 1172 
         self.tabWidget.setTabText(self.tabWidget.indexOf(self.tab), QtGui.QApplication.translate("MainWindow", "Preprocess RAW", None, QtGui.QApplication.UnicodeUTF8))
1173 
-        self.monoGroupBox.setTitle(QtGui.QApplication.translate("MainWindow", "Non-linear least squares fit", None, QtGui.QApplication.UnicodeUTF8))
1173 
+        self.monoGroupBox.setTitle(QtGui.QApplication.translate("MainWindow", "Non-linear least s&quares fit", None, QtGui.QApplication.UnicodeUTF8))
1174 
         self.monoGO.setText(QtGui.QApplication.translate("MainWindow", "FIT", None, QtGui.QApplication.UnicodeUTF8))
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         self.monoGO.setText(QtGui.QApplication.translate("MainWindow", "FIT", None, QtGui.QApplication.UnicodeUTF8))
1175 
         self.label_16.setText(QtGui.QApplication.translate("MainWindow", "Intercept", None, QtGui.QApplication.UnicodeUTF8))
 1175 
         self.label_16.setText(QtGui.QApplication.translate("MainWindow", "Intercept", None, QtGui.QApplication.UnicodeUTF8))
1176 
         self.label_20.setText(QtGui.QApplication.translate("MainWindow", "Mask first N echoes", None, QtGui.QApplication.UnicodeUTF8))
 1176 
         self.label_20.setText(QtGui.QApplication.translate("MainWindow", "Mask first N echoes", None, QtGui.QApplication.UnicodeUTF8))
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         self.logTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
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         self.logTextBrowser.setHtml(QtGui.QApplication.translate("MainWindow", "<!DOCTYPE HTML PUBLIC \"-//W3C//DTD HTML 4.0//EN\" \"http://www.w3.org/TR/REC-html40/strict.dtd\">\n"
1269 
 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
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 "<html><head><meta name=\"qrichtext\" content=\"1\" /><style type=\"text/css\">\n"
1270 
 "p, li { white-space: pre-wrap; }\n"
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 "p, li { white-space: pre-wrap; }\n"
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-"</style></head><body style=\" font-family:\'Ubuntu\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"
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+"</style></head><body style=\" font-family:\'Sans\'; font-size:11pt; font-weight:400; font-style:normal;\">\n"
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 "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><span style=\" font-family:\'Sans Serif\'; font-size:9pt;\">All processing steps are recorded here for your records</span></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
 1272 
 "<p style=\" margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;\"><span style=\" font-family:\'Sans Serif\'; font-size:9pt;\">All processing steps are recorded here for your records</span></p></body></html>", None, QtGui.QApplication.UnicodeUTF8))
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         self.label_53.setText(QtGui.QApplication.translate("MainWindow", "Processing log", None, QtGui.QApplication.UnicodeUTF8))
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         self.label_53.setText(QtGui.QApplication.translate("MainWindow", "Processing log", None, QtGui.QApplication.UnicodeUTF8))
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         self.pushButton_3.setText(QtGui.QApplication.translate("MainWindow", "Save", None, QtGui.QApplication.UnicodeUTF8))
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         self.pushButton_3.setText(QtGui.QApplication.translate("MainWindow", "Save", None, QtGui.QApplication.UnicodeUTF8))

+ 10
- 10
GUI/borehole2.ui View File

79 
         <rect>
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         <rect>
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          <x>0</x>
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          <x>0</x>
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          <y>0</y>
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          <y>0</y>
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-         <width>964</width>
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+         <width>970</width>
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          <height>800</height>
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          <height>800</height>
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         </rect>
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         </rect>
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        </property>
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        </property>
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               <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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               <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
481 
 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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 p, li { white-space: pre-wrap; }
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 p, li { white-space: pre-wrap; }
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-&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Ubuntu'; font-size:8pt; font-weight:400; font-style:italic;&quot;&gt;
483 
+&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Sans'; font-size:8pt; font-weight:400; font-style:italic;&quot;&gt;
484 
 &lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:'DejaVu Serif'; font-size:9pt;&quot;&gt;Load supported RAW Dataset header from file menu&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
 484 
 &lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:'DejaVu Serif'; font-size:9pt;&quot;&gt;Load supported RAW Dataset header from file menu&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
485 
              </property>
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              </property>
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             </widget>
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             </widget>
533 
               <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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               <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
534 
 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
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 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
535 
 p, li { white-space: pre-wrap; }
 535 
 p, li { white-space: pre-wrap; }
536 
-&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Ubuntu'; font-size:11pt; font-weight:400; font-style:italic;&quot;&gt;
536 
+&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Sans'; font-size:11pt; font-weight:400; font-style:italic;&quot;&gt;
537 
 &lt;p style=&quot;-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'DejaVu Serif'; font-size:10pt;&quot;&gt;&lt;br /&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
 537 
 &lt;p style=&quot;-qt-paragraph-type:empty; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px; font-family:'DejaVu Serif'; font-size:10pt;&quot;&gt;&lt;br /&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
538 
              </property>
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              </property>
539 
             </widget>
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             </widget>
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               <number>30</number>
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               <number>30</number>
1076 
              </property>
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              </property>
1077 
              <property name="value">
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              <property name="value">
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-              <number>14</number>
1078 
+              <number>20</number>
1079 
              </property>
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              </property>
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             </widget>
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             </widget>
1081 
             <widget class="QLabel" name="label_41">
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             <widget class="QLabel" name="label_41">
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              </size>
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              </size>
1216 
             </property>
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             </property>
1217 
             <property name="title">
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             <property name="title">
1218 
-             <string>Non-linear least squares fit</string>
1218 
+             <string>Non-linear least s&amp;quares fit</string>
1219 
             </property>
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             </property>
1220 
             <property name="checkable">
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             <property name="checkable">
1221 
              <bool>true</bool>
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              <bool>true</bool>
1416 
               <number>100</number>
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               <number>100</number>
1417 
              </property>
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              </property>
1418 
              <property name="value">
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              <property name="value">
1419 
-              <number>2</number>
1419 
+              <number>1</number>
1420 
              </property>
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              </property>
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             </widget>
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             </widget>
1422 
             <widget class="QSpinBox" name="nT2SpinBox">
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             <widget class="QSpinBox" name="nT2SpinBox">
1435 
               <number>100</number>
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               <number>100</number>
1436 
              </property>
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              </property>
1437 
              <property name="value">
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              <property name="value">
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-              <number>20</number>
1438 
+              <number>30</number>
1439 
              </property>
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              </property>
1440 
             </widget>
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             </widget>
1441 
             <widget class="QLabel" name="label_30">
 1441 
             <widget class="QLabel" name="label_30">
1492 
               <double>8000.000000000000000</double>
 1492 
               <double>8000.000000000000000</double>
1493 
              </property>
 1493 
              </property>
1494 
              <property name="value">
 1494 
              <property name="value">
1495 
-              <double>500.000000000000000</double>
1495 
+              <double>1000.000000000000000</double>
1496 
              </property>
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              </property>
1497 
             </widget>
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             </widget>
1498 
             <widget class="QLabel" name="label">
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             <widget class="QLabel" name="label">
3223 
              <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
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              <string>&lt;!DOCTYPE HTML PUBLIC &quot;-//W3C//DTD HTML 4.0//EN&quot; &quot;http://www.w3.org/TR/REC-html40/strict.dtd&quot;&gt;
3224 
 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
 3224 
 &lt;html&gt;&lt;head&gt;&lt;meta name=&quot;qrichtext&quot; content=&quot;1&quot; /&gt;&lt;style type=&quot;text/css&quot;&gt;
3225 
 p, li { white-space: pre-wrap; }
 3225 
 p, li { white-space: pre-wrap; }
3226 
-&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Ubuntu'; font-size:11pt; font-weight:400; font-style:normal;&quot;&gt;
3226 
+&lt;/style&gt;&lt;/head&gt;&lt;body style=&quot; font-family:'Sans'; font-size:11pt; font-weight:400; font-style:normal;&quot;&gt;
3227 
 &lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:'Sans Serif'; font-size:9pt;&quot;&gt;All processing steps are recorded here for your records&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
 3227 
 &lt;p style=&quot; margin-top:0px; margin-bottom:0px; margin-left:0px; margin-right:0px; -qt-block-indent:0; text-indent:0px;&quot;&gt;&lt;span style=&quot; font-family:'Sans Serif'; font-size:9pt;&quot;&gt;All processing steps are recorded here for your records&lt;/span&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;</string>
3228 
             </property>
 3228 
             </property>
3229 
            </widget>
 3229 
            </widget>
3268 
      <x>0</x>
 3268 
      <x>0</x>
3269 
      <y>0</y>
 3269 
      <y>0</y>
3270 
      <width>1000</width>
 3270 
      <width>1000</width>
3271 
-     <height>25</height>
3271 
+     <height>22</height>
3272 
     </rect>
 3272 
     </rect>
3273 
    </property>
 3273 
    </property>
3274 
    <widget class="QMenu" name="menuFile">
 3274 
    <widget class="QMenu" name="menuFile">

+ 25
- 3
GUI/main.py View File

427
427
428 
         dat = open("NMR-log.dat","w")
428 
         dat = open("NMR-log.dat","w")
429 
         dat.write( "#depth,phi,T_2ML,FFV,BFV,CBFV\n" )
 429 
         dat.write( "#depth,phi,T_2ML,FFV,BFV,CBFV\n" )
430 
+
431 
+        results = file("inversion.csv",'w')
430
432
431 
         Data = np.zeros( (len(self.ORS), len(self.ORS[0].T2T)) )
 433 
         Data = np.zeros( (len(self.ORS), len(self.ORS[0].T2T)) )
434 
+
432 
         times = self.ORS[0].T2T
 435 
         times = self.ORS[0].T2T
433 
         depTol = np.abs(self.ORS[self.headerstr[0]].depth - self.ORS[self.headerstr[-1]].depth)
436 
         depTol = np.abs(self.ORS[self.headerstr[0]].depth - self.ORS[self.headerstr[-1]].depth)
434 
-        t2scale = 100*depTol / len(self.ORS)  #TODO adjust based on total depth, was 20
437 
+        t2scale = 100*depTol / len(self.ORS)  #TODO adjust based on total depth, was 20
438 
+
435 
         for ff in self.headerstr:
 439 
         for ff in self.headerstr:
436 
             nT2 = len(self.ORS[ff].DistRes['Time'].T2Bins)
 440 
             nT2 = len(self.ORS[ff].DistRes['Time'].T2Bins)
437 
             dp.append( self.ORS[ff].depth )
 441 
             dp.append( self.ORS[ff].depth )
444 
             self.kt.fill_between( self.ORS[ff].DistRes['Time'].T2Bins, dp[ii] - t2scale*self.ORS[ff].DistRes['mod'], dp[ii]*np.ones( nT2 ), alpha=1, color='LimeGreen')
 448 
             self.kt.fill_between( self.ORS[ff].DistRes['Time'].T2Bins, dp[ii] - t2scale*self.ORS[ff].DistRes['mod'], dp[ii]*np.ones( nT2 ), alpha=1, color='LimeGreen')
445 
             Data[ff,:] = self.ORS[ff].T2D.imag
 449 
             Data[ff,:] = self.ORS[ff].T2D.imag
446
450
451 
+            for iid, val in enumerate(self.ORS[ff].DistRes['mod']):
452 
+                if iid == 0:
453 
+                    for it2, t2b in enumerate( self.ORS[ff].DistRes['Time'].T2Bins ):
454 
+                        if it2 == 0:
455 
+                            results.write( "%1.4f" %(t2b)  )
456 
+                        else:
457 
+                            results.write( ",%1.4f" %(t2b)  )
458 
+                    results.write("\n")
459 
+                    results.write( "%1.4f" %(val)  )
460 
+                else:
461 
+                    results.write( ",%1.4f" %(val)  )
462 
+            results.write("\n")
463 
+
447 
             dat.write( "%1.4f,%1.4f,%1.4f,%1.4f,%1.4f,%1.4f\n" %(dp[-1],phi[-1],LogMeanT2[-1],FFV[-1],BFV[-1],CBFV[-1]))
 464 
             dat.write( "%1.4f,%1.4f,%1.4f,%1.4f,%1.4f,%1.4f\n" %(dp[-1],phi[-1],LogMeanT2[-1],FFV[-1],BFV[-1],CBFV[-1]))
448 
             #if np.abs( phi[-1] - (FFV[-1] + BFV[-1] + CBFV[-1]) ) > 1e-6:
 465 
             #if np.abs( phi[-1] - (FFV[-1] + BFV[-1] + CBFV[-1]) ) > 1e-6:
449 
             #    print("mismatch", phi[-1] - (FFV[-1] + BFV[-1] + CBFV[-1]), CBFV[-1] )
466 
             #    print("mismatch", phi[-1] - (FFV[-1] + BFV[-1] + CBFV[-1]), CBFV[-1] )
450 
             #else:
 467 
             #else:
451 
             #    print("nope", CBFV[-1])
 468 
             #    print("nope", CBFV[-1])
452 
             ii += 1
 469 
             ii += 1
470 
+        results.close()
453 
         dat.close()
 471 
         dat.close()
454 
         #k =  ((c*np.array(phi))**m) * ( (np.array(FFV)/np.array(BFV))**n)
 472 
         #k =  ((c*np.array(phi))**m) * ( (np.array(FFV)/np.array(BFV))**n)
455 
         k = c * 1e4 *  (np.array(phi)**m) * ((np.array(FFV)/(np.array(BFV)+np.array(CBFV)))**n)
 473 
         k = c * 1e4 *  (np.array(phi)**m) * ((np.array(FFV)/(np.array(BFV)+np.array(CBFV)))**n)
501 
         pc = self.dd.pcolor(X,Y, Data[:,ma:], cmap = 'viridis') #, vmin = -np.max(Data[:,ma:]))
 519 
         pc = self.dd.pcolor(X,Y, Data[:,ma:], cmap = 'viridis') #, vmin = -np.max(Data[:,ma:]))
502 
         #pc = self.dd.pcolor(X,Y, Data, cmap = 'seismic_r') #, vmin=-.5, vmax=.5) #, vmin = 0)
 520 
         #pc = self.dd.pcolor(X,Y, Data, cmap = 'seismic_r') #, vmin=-.5, vmax=.5) #, vmin = 0)
503 
         #self.dd.set_ylim( self.dd.get_ylim()[::-1] )
 521 
         #self.dd.set_ylim( self.dd.get_ylim()[::-1] )
504 
-
522 
+
523 
+        np.savez("cmrdata",times2=times2,dp2=dp2,X=X, Y=Y, data=Data[:,ma:])
524 
+
505 
         self.dd.set_ylim( np.max(dp2), np.min(dp2) )
 525 
         self.dd.set_ylim( np.max(dp2), np.min(dp2) )
506 
         self.dd.set_xlim( times2[0], times2[-1] )
 526 
         self.dd.set_xlim( times2[0], times2[-1] )
507 
         #self.dd.set_xlim( np.log10(times[0]), np.log10(times[-1]) )
 527 
         #self.dd.set_xlim( np.log10(times[0]), np.log10(times[-1]) )
508
528
509 
-        self.dd.set_xscale("log", nonposy='clip')
529 
+        self.dd.set_xscale("log", nonposx='clip')
510
530
511 
         ############################################################
 531 
         ############################################################
512 
         # decay logs
 532 
         # decay logs
943 
             dmin = 7672  # Morrow           #
 963 
             dmin = 7672  # Morrow           #
944 
             dmax = 7707  # Morrow Bottom    #
 964 
             dmax = 7707  # Morrow Bottom    #
945 
             #################################
 965 
             #################################
966 
+            #dmin = 7672 - 150  # Morrow           #
967 
+            #dmax = 7707 - 120  # Morrow Bottom    #
946 
             #dmin = 7672+10.25  # Morrow           #
 968 
             #dmin = 7672+10.25  # Morrow           #
947 
             #dmax = 7707-10.25  # Morrow Bottom    #
 969 
             #dmax = 7707-10.25  # Morrow Bottom    #
948 
             #dmin = 0
970 
             #dmin = 0

+ 4
- 4
MRProc.py View File

359 
         """
 359 
         """
360 
         self.computeSTD()
 360 
         self.computeSTD()
361 
         self.gpd = gpd
 361 
         self.gpd = gpd
362 
-
363 
         if self.burst:
 362 
         if self.burst:
364 
             self.gateIntegrateBurst(gpd, stackEfficiency)
 363 
             self.gateIntegrateBurst(gpd, stackEfficiency)
365 
             print ("BBBBBUUURSSSSTTTTTTTTTTTT DOOOM FIXME MRProc.py!!!!!!!!!!!")
 364 
             print ("BBBBBUUURSSSSTTTTTTTTTTTT DOOOM FIXME MRProc.py!!!!!!!!!!!")
410 
         self.sigma = np.sqrt(Vars  * (1./isum)**stackEfficiency ) # Var (aX) = a^2 Var(x)
 409 
         self.sigma = np.sqrt(Vars  * (1./isum)**stackEfficiency ) # Var (aX) = a^2 Var(x)
411
410
412 
         # Bootstrap
 411 
         # Bootstrap
413 
-        bootstrap = True
412 
+        bootstrap = False
414 
         #bs = open("bootstrap.dat", "a")
 413 
         #bs = open("bootstrap.dat", "a")
415
414
416 
         if bootstrap:
 415 
         if bootstrap:
571
570
572 
         # mask first few echoes, just for detection
571 
         # mask first few echoes, just for detection
573 
         NM = 2
572 
         NM = 2
574 
-        [conv,E0,df,phi,T2] = quadratureDetect(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::], True, True, False)
573 
+        #[conv,E0,df,phi,T2] = quadratureDetect(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::], False, False, False)
575 
         #[conv,E0,df,phi,T2] = quadratureDetect(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::], False, False, True)
 574 
         #[conv,E0,df,phi,T2] = quadratureDetect(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::], False, False, True)
576 
         #                                                                              #CorrectFreq=False, BiExp=False, CorrectDC=False)
 575 
         #                                                                              #CorrectFreq=False, BiExp=False, CorrectDC=False)
577
576
578 
-        #[conv,E0,df,phi,T2] = quadratureDetect2(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::])
577 
+        [conv,E0,df,phi,T2] = quadratureDetect2(np.imag(self.T2D[NM::]), np.real(self.T2D[NM::]), self.T2T[NM::])
578 
+        print("df", df, "phi", phi)
579 
         self.zeta1 = phi
 579 
         self.zeta1 = phi
580
580
581 
         #if conv: # failed convergence
 581 
         #if conv: # failed convergence

+ 2
- 2
decay.py View File

469 
             E0   =  r['$'](report,'par')[0]   # E01
 469 
             E0   =  r['$'](report,'par')[0]   # E01
470 
             phi =  r['$'](report,'par')[1]   # phase
470 
             phi =  r['$'](report,'par')[1]   # phase
471 
             T2  =  r['$'](report,'par')[2]   # T2
 471 
             T2  =  r['$'](report,'par')[2]   # T2
472 
-    phi = 0.907655876627
473 
-    df = 0.
472 
+    #phi = 0.907655876627
473 
+    #df = 0.
474 
     #phi = 0
 474 
     #phi = 0
475 
     print ("df", df)# = 0
 475 
     print ("df", df)# = 0
476 
     return conv, E0,df,phi,T2
 476 
     return conv, E0,df,phi,T2

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